PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G001500.2
Common NameB456_001G001500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 391aa    MW: 44182.8 Da    PI: 5.631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G001500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000266892123
                        EEETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                        y+C+ C+k ++++  + +H+++  H
  Gorai.001G001500.2 68 YSCGLCDKGYRSSKAYSQHLKSraH 92
                        99******************98666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.073135IPR003604Zinc finger, U1-type
SuperFamilySSF576671.0E-5336No hitNo description
SMARTSM0035533428IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280628IPR007087Zinc finger, C2H2
SMARTSM004510.926599IPR003604Zinc finger, U1-type
SuperFamilySSF576672.09E-667104No hitNo description
SMARTSM003550.456892IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2656897IPR007087Zinc finger, C2H2
PfamPF121715.2E-66892IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807092IPR007087Zinc finger, C2H2
SuperFamilySSF576674.02E-8152200No hitNo description
PfamPF127562.6E-25167268IPR015880Zinc finger, C2H2-like
SMARTSM0035525216243IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MPGLTCNACN REFLDEAERK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QAALAEEKDK  60
QNETPMLYSC GLCDKGYRSS KAYSQHLKSR AHIAQASQHP EEEKAAIIKP FIRRAVNKPP  120
QPRDTNDEES DDDWVEVDPD EDLASGDEMD IDNGEETGQE ELDPCCCFMC DLKHDTIESC  180
VVHMHKFHGF FIPDVEYLKN PEGLLIYLGL KVKRDFICLY CNERCHPFTS LEAVRKHMAA  240
KGHCKVHYGD GDEDEEAELE EFYDYSSSYV DDWGKQLVAV GDKDSTVELG GGSELIITRK  300
SDEGIMSKTL GSREYSRYYR QSPRPSPANN MAITAALASR SMGLATVQSK EQIVRMKVMK  360
AMNRSGVETM RTKVGMKNNV IQNLPKNVPY *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477804.10.0PREDICTED: zinc finger protein 622-like
SwissprotQ8H1G50.0REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBLA0A0D2N2R50.0A0A0D2N2R5_G
STRINGVIT_04s0008g02540.t010.0(Vitis vinifera)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]